Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7568176 chr2:24313758 T/A 0.00011 178 25.17 27.27 17.43 KM Plot
PCPG rs7568272 chr2:24313785 T/C 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs7568705 chr2:239081808 C/T 1.54E-5 175 31.12 20.17 18.7 KM Plot
PCPG rs75691112 chr1:106638874 C/T 0.000289 171 25.28 25.9 3.17 KM Plot
PCPG rs7569606 chr2:2662471 G/A 1.33E-8 174 26.88 13.4 3.63 KM Plot
PCPG rs7570088 chr2:242571131 C/T 1.07E-10 172 25.67 21.9 10.3 KM Plot
PCPG rs75701491 chr10:50552932 T/C 3.73E-6 177 24.53 34.37 25.17 KM Plot
PCPG rs75705621 chr7:158672150 C/T 0 177 25.53 20.37 3.17 KM Plot
PCPG rs75709414 chr16:90151109 G/C 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs7571029 chr2:2663477 T/C 1.33E-8 174 26.88 13.4 3.63 KM Plot
PCPG rs7572600 chr2:61557949 G/A 0.000452 178 24.1 30.93 17.85 KM Plot
PCPG rs7572911 chr2:11031571 A/C 6.72E-7 178 8.82 27.2 25.17 KM Plot
PCPG rs75729908 chr7:158666049 C/T 0 177 25.53 20.37 3.17 KM Plot
PCPG rs75739146 chr2:24322769 C/T 0.000123 176 25.28 26.92 17.43 KM Plot
PCPG rs75740804 chr7:158666349 G/T 0 177 25.53 20.37 3.17 KM Plot